Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.05■□□□□ 0.48
HPS3Q969F9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
HPS3Q969F9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.05■□□□□ 0.48
HPS3Q969F9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.05■□□□□ 0.48
HPS3Q969F9 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.05■□□□□ 0.48
HPS3Q969F9 AC069224.1-201ENST00000566372 1715 ntBASIC18.05■□□□□ 0.48
HPS3Q969F9 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.05■□□□□ 0.48
HPS3Q969F9 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
HPS3Q969F9 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HPS3Q969F9 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HPS3Q969F9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HPS3Q969F9 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HPS3Q969F9 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.04■□□□□ 0.48
HPS3Q969F9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 AKAP8P1-201ENST00000434743 1349 ntBASIC18.04■□□□□ 0.48
HPS3Q969F9 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.04■□□□□ 0.48
HPS3Q969F9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.04■□□□□ 0.48
HPS3Q969F9 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 AC022188.1-201ENST00000620960 1664 ntBASIC18.04■□□□□ 0.48
HPS3Q969F9 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC18.04■□□□□ 0.48
HPS3Q969F9 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.04■□□□□ 0.48
HPS3Q969F9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS3Q969F9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS3Q969F9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.04■□□□□ 0.48
HPS3Q969F9 AC112482.1-201ENST00000492080 688 ntBASIC18.04■□□□□ 0.48
HPS3Q969F9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS3Q969F9 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS3Q969F9 LINC01225-203ENST00000563550 1244 ntBASIC18.04■□□□□ 0.48
HPS3Q969F9 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.04■□□□□ 0.48
HPS3Q969F9 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 AC026120.1-201ENST00000611536 926 ntBASIC18.04■□□□□ 0.48
HPS3Q969F9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HPS3Q969F9 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HPS3Q969F9 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SPDYE11-202ENST00000450699 704 ntBASIC18.03■□□□□ 0.48
HPS3Q969F9 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.03■□□□□ 0.48
HPS3Q969F9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SPDYE9P-201ENST00000570642 692 ntBASIC18.03■□□□□ 0.48
HPS3Q969F9 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 AC073389.1-201ENST00000595595 795 ntBASIC18.03■□□□□ 0.48
HPS3Q969F9 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SPDYE10P-202ENST00000612005 668 ntBASIC18.03■□□□□ 0.48
HPS3Q969F9 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
HPS3Q969F9 SPDYE8P-202ENST00000612377 668 ntBASIC18.03■□□□□ 0.48
HPS3Q969F9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.03■□□□□ 0.48
HPS3Q969F9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.03■□□□□ 0.48
HPS3Q969F9 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HPS3Q969F9 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.02■□□□□ 0.48
HPS3Q969F9 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.02■□□□□ 0.48
HPS3Q969F9 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HPS3Q969F9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.02■□□□□ 0.48
HPS3Q969F9 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HPS3Q969F9 ELL2P1-201ENST00000413990 1906 ntBASIC18.02■□□□□ 0.48
HPS3Q969F9 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms