Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PRORSD1P-202ENST00000563365 2154 ntBASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 AP006294.1-201ENST00000415407 339 ntBASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 AC011495.1-201ENST00000498085 584 ntBASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HDDC3Q8N4P3 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 NFIC-211ENST00000641145 8399 ntBASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 RN7SL618P-201ENST00000477850 296 ntBASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 U82695.1-201ENST00000635752 1889 ntBASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HDDC3Q8N4P3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 AC087499.6-201ENST00000411576 835 ntBASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 AL139010.1-201ENST00000454878 894 ntBASIC16.29■□□□□ 0.2
HDDC3Q8N4P3 RN7SL752P-201ENST00000463779 287 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms