Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 PCDHA12-202ENST00000613593 2588 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AC112492.5-201ENST00000421897 457 ntBASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 AL365330.1-201ENST00000607459 531 ntBASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 RPSAP52-203ENST00000622976 1023 ntBASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 BNIP3P1-202ENST00000550043 1585 ntBASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
SHROOM1Q2M3G4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 IGHV3-71-201ENST00000523324 359 ntBASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
SHROOM1Q2M3G4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHROOM1Q2M3G4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SHROOM1Q2M3G4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.83■□□□□ 0.6
SHROOM1Q2M3G4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHROOM1Q2M3G4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHROOM1Q2M3G4 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC18.83■□□□□ 0.6
SHROOM1Q2M3G4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms