Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 OVCH1-AS1-204ENST00000641955 5529 ntBASIC18.91■□□□□ 0.62
SSRP1Q08945 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 LINC02199-201ENST00000506655 2702 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 MIR346-201ENST00000362234 95 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.9■□□□□ 0.62
SSRP1Q08945 AC142381.1-201ENST00000426099 345 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.9■□□□□ 0.62
SSRP1Q08945 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.9■□□□□ 0.62
SSRP1Q08945 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.9■□□□□ 0.62
SSRP1Q08945 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 KRT8P23-201ENST00000560090 1207 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 AP000842.3-202ENST00000569238 1080 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.9■□□□□ 0.62
SSRP1Q08945 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.9■□□□□ 0.62
SSRP1Q08945 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.9■□□□□ 0.62
SSRP1Q08945 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SSRP1Q08945 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SSRP1Q08945 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SSRP1Q08945 UXT-AS1-201ENST00000590504 1525 ntBASIC18.9■□□□□ 0.62
SSRP1Q08945 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SSRP1Q08945 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSRP1Q08945 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
SSRP1Q08945 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.89■□□□□ 0.62
SSRP1Q08945 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.89■□□□□ 0.62
SSRP1Q08945 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
SSRP1Q08945 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 MIR4321-201ENST00000592276 80 ntBASIC18.89■□□□□ 0.61
SSRP1Q08945 AC022145.2-201ENST00000598203 171 ntBASIC18.89■□□□□ 0.61
SSRP1Q08945 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.89■□□□□ 0.61
SSRP1Q08945 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.89■□□□□ 0.61
SSRP1Q08945 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
SSRP1Q08945 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SSRP1Q08945 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SSRP1Q08945 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.88■□□□□ 0.61
SSRP1Q08945 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SSRP1Q08945 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.88■□□□□ 0.61
SSRP1Q08945 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.88■□□□□ 0.61
SSRP1Q08945 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.88■□□□□ 0.61
SSRP1Q08945 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
SSRP1Q08945 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SSRP1Q08945 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.88■□□□□ 0.61
SSRP1Q08945 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms