Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC079140.1-201ENST00000508039 487 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.05■□□□□ 0.32
HDAC4P56524 LINC01225-203ENST00000563550 1244 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.05■□□□□ 0.32
HDAC4P56524 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 MIR4469-201ENST00000583919 79 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 AC008267.7-201ENST00000624570 1194 ntBASIC17.05■□□□□ 0.32
HDAC4P56524 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC4P56524 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC4P56524 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC4P56524 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.04■□□□□ 0.32
HDAC4P56524 SPDYE11-202ENST00000450699 704 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 CEND1P1-201ENST00000451006 455 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.04■□□□□ 0.32
HDAC4P56524 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.04■□□□□ 0.32
HDAC4P56524 SPDYE9P-201ENST00000570642 692 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 AC027307.2-201ENST00000591252 911 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 SPDYE10P-202ENST00000612005 668 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 SPDYE8P-202ENST00000612377 668 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HDAC4P56524 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.04■□□□□ 0.32
HDAC4P56524 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 AC068418.2-201ENST00000577309 3703 ntBASIC17.04■□□□□ 0.32
HDAC4P56524 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC4P56524 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC4P56524 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC4P56524 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.03■□□□□ 0.32
HDAC4P56524 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HDAC4P56524 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC4P56524 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 UPF3AP3-201ENST00000420996 769 ntBASIC17.03■□□□□ 0.32
HDAC4P56524 AC142381.1-201ENST00000426099 345 ntBASIC17.03■□□□□ 0.32
HDAC4P56524 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC4P56524 TIMM8BP1-201ENST00000452384 211 ntBASIC17.03■□□□□ 0.32
HDAC4P56524 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 AC105233.2-201ENST00000523697 349 ntBASIC17.03■□□□□ 0.32
HDAC4P56524 AF228730.5-201ENST00000530288 346 ntBASIC17.03■□□□□ 0.32
HDAC4P56524 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.03■□□□□ 0.32
HDAC4P56524 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC4P56524 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC4P56524 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.03■□□□□ 0.32
HDAC4P56524 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC4P56524 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HDAC4P56524 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
HDAC4P56524 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC4P56524 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC4P56524 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms