Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.86■□□□□ 0.13
HNF4AP41235 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.86■□□□□ 0.13
HNF4AP41235 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.86■□□□□ 0.13
HNF4AP41235 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.86■□□□□ 0.13
HNF4AP41235 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.86■□□□□ 0.13
HNF4AP41235 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.86■□□□□ 0.13
HNF4AP41235 AL078644.1-201ENST00000609881 752 ntBASIC15.86■□□□□ 0.13
HNF4AP41235 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.86■□□□□ 0.13
HNF4AP41235 LINC02199-201ENST00000506655 2702 ntBASIC15.86■□□□□ 0.13
HNF4AP41235 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.86■□□□□ 0.13
HNF4AP41235 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.85■□□□□ 0.13
HNF4AP41235 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 AP002472.1-201ENST00000577490 586 ntBASIC15.85■□□□□ 0.13
HNF4AP41235 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.85■□□□□ 0.13
HNF4AP41235 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
HNF4AP41235 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.85■□□□□ 0.13
HNF4AP41235 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.85■□□□□ 0.13
HNF4AP41235 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HNF4AP41235 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HNF4AP41235 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.84■□□□□ 0.13
HNF4AP41235 AC022188.1-201ENST00000620960 1664 ntBASIC15.84■□□□□ 0.13
HNF4AP41235 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HNF4AP41235 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.84■□□□□ 0.13
HNF4AP41235 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HNF4AP41235 FAM58CP-201ENST00000435741 640 ntBASIC15.84■□□□□ 0.13
HNF4AP41235 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.84■□□□□ 0.13
HNF4AP41235 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HNF4AP41235 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms