Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.23■□□□□ 0.35
CHRNA3P32297 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHRNA3P32297 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CHRNA3P32297 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 AC112504.1-201ENST00000623415 1841 ntBASIC17.22■□□□□ 0.35
CHRNA3P32297 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.22■□□□□ 0.35
CHRNA3P32297 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.22■□□□□ 0.35
CHRNA3P32297 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 PDPK2P-202ENST00000562415 1191 ntBASIC17.22■□□□□ 0.35
CHRNA3P32297 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.22■□□□□ 0.35
CHRNA3P32297 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.22■□□□□ 0.35
CHRNA3P32297 ACTL9-202ENST00000612068 1252 ntBASIC17.22■□□□□ 0.35
CHRNA3P32297 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.22■□□□□ 0.35
CHRNA3P32297 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 SLC22A20-204ENST00000530038 1673 ntBASIC17.22■□□□□ 0.35
CHRNA3P32297 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.22■□□□□ 0.35
CHRNA3P32297 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CHRNA3P32297 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
CHRNA3P32297 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.21■□□□□ 0.35
CHRNA3P32297 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.21■□□□□ 0.35
CHRNA3P32297 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.21■□□□□ 0.35
CHRNA3P32297 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.21■□□□□ 0.35
CHRNA3P32297 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.21■□□□□ 0.35
CHRNA3P32297 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.21■□□□□ 0.35
CHRNA3P32297 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CHRNA3P32297 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CHRNA3P32297 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CHRNA3P32297 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CHRNA3P32297 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CHRNA3P32297 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.21■□□□□ 0.34
CHRNA3P32297 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.21■□□□□ 0.34
CHRNA3P32297 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CHRNA3P32297 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CHRNA3P32297 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CHRNA3P32297 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.2■□□□□ 0.34
CHRNA3P32297 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.2■□□□□ 0.34
CHRNA3P32297 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.2■□□□□ 0.34
CHRNA3P32297 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 TSPY26P-202ENST00000565928 3884 ntBASIC17.2■□□□□ 0.34
CHRNA3P32297 AL353732.1-201ENST00000569618 1459 ntBASIC17.2■□□□□ 0.34
CHRNA3P32297 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.2■□□□□ 0.34
CHRNA3P32297 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
CHRNA3P32297 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CHRNA3P32297 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms