Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.66■□□□□ 0.26
SLC6A4P31645 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SLC6A4P31645 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.66■□□□□ 0.26
SLC6A4P31645 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.66■□□□□ 0.26
SLC6A4P31645 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.66■□□□□ 0.26
SLC6A4P31645 AL844908.2-201ENST00000609461 460 ntBASIC16.66■□□□□ 0.26
SLC6A4P31645 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.66■□□□□ 0.26
SLC6A4P31645 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SLC6A4P31645 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.66■□□□□ 0.26
SLC6A4P31645 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.65■□□□□ 0.26
SLC6A4P31645 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 AC092364.2-202ENST00000597012 1073 ntBASIC16.65■□□□□ 0.26
SLC6A4P31645 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.65■□□□□ 0.26
SLC6A4P31645 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SLC6A4P31645 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.65■□□□□ 0.26
SLC6A4P31645 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.65■□□□□ 0.26
SLC6A4P31645 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.64■□□□□ 0.26
SLC6A4P31645 CYP4F24P-201ENST00000586049 1580 ntBASIC16.64■□□□□ 0.25
SLC6A4P31645 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.64■□□□□ 0.25
SLC6A4P31645 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 SPDYE17-201ENST00000412399 783 ntBASIC16.64■□□□□ 0.25
SLC6A4P31645 AL512638.1-201ENST00000457493 794 ntBASIC16.64■□□□□ 0.25
SLC6A4P31645 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.64■□□□□ 0.25
SLC6A4P31645 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.64■□□□□ 0.25
SLC6A4P31645 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SLC6A4P31645 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SLC6A4P31645 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.64■□□□□ 0.25
SLC6A4P31645 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms