Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 BASP1P1-201ENST00000430708 665 ntBASIC18.59■□□□□ 0.57
SMARCA1P28370 SERBP1P3-201ENST00000459980 809 ntBASIC18.59■□□□□ 0.57
SMARCA1P28370 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.59■□□□□ 0.57
SMARCA1P28370 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.59■□□□□ 0.57
SMARCA1P28370 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SMARCA1P28370 AL662844.4-201ENST00000606367 2838 ntBASIC18.59■□□□□ 0.57
SMARCA1P28370 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.59■□□□□ 0.57
SMARCA1P28370 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.58■□□□□ 0.57
SMARCA1P28370 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SMARCA1P28370 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCA1P28370 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCA1P28370 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCA1P28370 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
SMARCA1P28370 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SMARCA1P28370 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.58■□□□□ 0.57
SMARCA1P28370 AC069224.1-201ENST00000566372 1715 ntBASIC18.58■□□□□ 0.57
SMARCA1P28370 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
SMARCA1P28370 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.58■□□□□ 0.56
SMARCA1P28370 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.58■□□□□ 0.56
SMARCA1P28370 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.58■□□□□ 0.56
SMARCA1P28370 AC004890.2-204ENST00000481968 304 ntBASIC18.58■□□□□ 0.56
SMARCA1P28370 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 AL033527.5-202ENST00000641632 1098 ntBASIC18.58■□□□□ 0.56
SMARCA1P28370 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.58■□□□□ 0.56
SMARCA1P28370 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
SMARCA1P28370 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SMARCA1P28370 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SMARCA1P28370 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.57■□□□□ 0.56
SMARCA1P28370 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.57■□□□□ 0.56
SMARCA1P28370 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCA1P28370 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCA1P28370 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.57■□□□□ 0.56
SMARCA1P28370 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.57■□□□□ 0.56
SMARCA1P28370 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
SMARCA1P28370 AC009477.1-201ENST00000452936 217 ntBASIC18.57■□□□□ 0.56
SMARCA1P28370 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.57■□□□□ 0.56
SMARCA1P28370 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SMARCA1P28370 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.57■□□□□ 0.56
SMARCA1P28370 AL844908.2-201ENST00000609461 460 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms