Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.11■□□□□ 0.33
APOEP02649 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.11■□□□□ 0.33
APOEP02649 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.11■□□□□ 0.33
APOEP02649 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
APOEP02649 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 AC046158.3-201ENST00000624947 2558 ntBASIC17.11■□□□□ 0.33
APOEP02649 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.11■□□□□ 0.33
APOEP02649 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 LINC01144-201ENST00000626198 1710 ntBASIC17.1■□□□□ 0.33
APOEP02649 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 AC073439.1-201ENST00000624121 1774 ntBASIC17.1■□□□□ 0.33
APOEP02649 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
APOEP02649 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
APOEP02649 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.1■□□□□ 0.33
APOEP02649 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.1■□□□□ 0.33
APOEP02649 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.1■□□□□ 0.33
APOEP02649 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 LINC01225-203ENST00000563550 1244 ntBASIC17.1■□□□□ 0.33
APOEP02649 AL138918.1-201ENST00000568306 659 ntBASIC17.1■□□□□ 0.33
APOEP02649 AC027612.4-201ENST00000605371 583 ntBASIC17.1■□□□□ 0.33
APOEP02649 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
APOEP02649 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
APOEP02649 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.1■□□□□ 0.33
APOEP02649 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.1■□□□□ 0.33
APOEP02649 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.1■□□□□ 0.33
APOEP02649 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
APOEP02649 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
APOEP02649 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 PTMS-202ENST00000389462 773 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.09■□□□□ 0.33
APOEP02649 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.09■□□□□ 0.33
APOEP02649 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.09■□□□□ 0.33
APOEP02649 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
APOEP02649 AP000842.3-202ENST00000569238 1080 ntBASIC17.09■□□□□ 0.33
APOEP02649 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms