Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CTBP2P5-201ENST00000454986 1264 ntBASIC19.58■□□□□ 0.72
COL4A1P02462 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A1P02462 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 AC104989.1-201ENST00000519711 778 ntBASIC19.58■□□□□ 0.72
COL4A1P02462 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.58■□□□□ 0.72
COL4A1P02462 AP005482.1-201ENST00000563722 1273 ntBASIC19.58■□□□□ 0.72
COL4A1P02462 AC120045.2-201ENST00000567334 178 ntBASIC19.58■□□□□ 0.72
COL4A1P02462 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.58■□□□□ 0.72
COL4A1P02462 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL4A1P02462 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.58■□□□□ 0.72
COL4A1P02462 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL4A1P02462 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL4A1P02462 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A1P02462 USP40-206ENST00000443711 628 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 VDAC1P7-201ENST00000462417 847 ntBASIC19.57■□□□□ 0.72
COL4A1P02462 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A1P02462 AC068587.3-201ENST00000526613 355 ntBASIC19.57■□□□□ 0.72
COL4A1P02462 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A1P02462 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A1P02462 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.57■□□□□ 0.72
COL4A1P02462 CLUHP6-201ENST00000580789 941 ntBASIC19.57■□□□□ 0.72
COL4A1P02462 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL4A1P02462 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL4A1P02462 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.57■□□□□ 0.72
COL4A1P02462 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 PKIG-203ENST00000372887 769 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A1P02462 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC19.56■□□□□ 0.72
COL4A1P02462 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
COL4A1P02462 RPL28-203ENST00000428193 573 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 FTH1P14-201ENST00000482930 551 ntBASIC19.56■□□□□ 0.72
COL4A1P02462 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 RPL28-207ENST00000558815 616 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 MIR4538-201ENST00000581377 78 ntBASIC19.56■□□□□ 0.72
COL4A1P02462 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL4A1P02462 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC19.56■□□□□ 0.72
COL4A1P02462 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC19.56■□□□□ 0.72
COL4A1P02462 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL4A1P02462 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A1P02462 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A1P02462 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A1P02462 USE1-206ENST00000595101 1776 ntTSL 2 BASIC19.55■□□□□ 0.72
COL4A1P02462 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A1P02462 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL4A1P02462 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms