Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 FP236241.2-201ENST00000624906 1185 ntBASIC18.73■□□□□ 0.59
COL2A1P02458 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
COL2A1P02458 FLJ38576-201ENST00000623820 2459 ntBASIC18.73■□□□□ 0.59
COL2A1P02458 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL2A1P02458 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL2A1P02458 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL2A1P02458 AGGF1P2-201ENST00000426656 2106 ntBASIC18.73■□□□□ 0.59
COL2A1P02458 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.73■□□□□ 0.59
COL2A1P02458 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC18.73■□□□□ 0.59
COL2A1P02458 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL2A1P02458 AC018665.1-201ENST00000622927 1362 ntBASIC18.72■□□□□ 0.59
COL2A1P02458 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
COL2A1P02458 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.72■□□□□ 0.59
COL2A1P02458 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 SOCS2P1-201ENST00000417727 557 ntBASIC18.72■□□□□ 0.59
COL2A1P02458 ACTG1P3-201ENST00000431775 1114 ntBASIC18.72■□□□□ 0.59
COL2A1P02458 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.72■□□□□ 0.59
COL2A1P02458 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.72■□□□□ 0.59
COL2A1P02458 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.72■□□□□ 0.59
COL2A1P02458 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.72■□□□□ 0.59
COL2A1P02458 AL359711.2-201ENST00000563105 872 ntBASIC18.72■□□□□ 0.59
COL2A1P02458 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.72■□□□□ 0.59
COL2A1P02458 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.72■□□□□ 0.59
COL2A1P02458 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.72■□□□□ 0.59
COL2A1P02458 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL2A1P02458 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.72■□□□□ 0.59
COL2A1P02458 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL2A1P02458 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL2A1P02458 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 KRT223P-202ENST00000449164 1292 ntBASIC18.71■□□□□ 0.59
COL2A1P02458 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.71■□□□□ 0.59
COL2A1P02458 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.71■□□□□ 0.59
COL2A1P02458 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.71■□□□□ 0.59
COL2A1P02458 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 COX11-210ENST00000639671 696 ntBASIC18.71■□□□□ 0.59
COL2A1P02458 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 MTHFR-217ENST00000641820 1569 ntBASIC18.71■□□□□ 0.59
COL2A1P02458 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 KRT43P-201ENST00000434019 910 ntBASIC18.71■□□□□ 0.59
COL2A1P02458 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL2A1P02458 ENPP7P5-201ENST00000541031 1031 ntBASIC18.71■□□□□ 0.59
COL2A1P02458 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL2A1P02458 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.71■□□□□ 0.59
COL2A1P02458 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.71■□□□□ 0.59
COL2A1P02458 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL2A1P02458 AL607033.1-201ENST00000623900 1599 ntBASIC18.7■□□□□ 0.58
COL2A1P02458 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.7■□□□□ 0.58
COL2A1P02458 AL121723.1-201ENST00000445194 1519 ntBASIC18.7■□□□□ 0.58
COL2A1P02458 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL2A1P02458 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.7■□□□□ 0.58
COL2A1P02458 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.7■□□□□ 0.58
COL2A1P02458 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL2A1P02458 AC005229.1-201ENST00000392885 409 ntBASIC18.7■□□□□ 0.58
COL2A1P02458 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL2A1P02458 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms