Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TEX28P1-201ENST00000613479 1221 ntBASIC18.22■□□□□ 0.51
MSH4O15457 TEX28P2-201ENST00000617764 1221 ntBASIC18.22■□□□□ 0.51
MSH4O15457 AL590560.3-201ENST00000623350 461 ntBASIC18.22■□□□□ 0.51
MSH4O15457 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.22■□□□□ 0.51
MSH4O15457 AC100757.3-201ENST00000622361 1406 ntBASIC18.22■□□□□ 0.51
MSH4O15457 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
MSH4O15457 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.22■□□□□ 0.51
MSH4O15457 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.21■□□□□ 0.51
MSH4O15457 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
MSH4O15457 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 TSSK5P-201ENST00000423978 907 ntBASIC18.21■□□□□ 0.51
MSH4O15457 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.21■□□□□ 0.51
MSH4O15457 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.21■□□□□ 0.51
MSH4O15457 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.21■□□□□ 0.51
MSH4O15457 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
MSH4O15457 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
MSH4O15457 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
MSH4O15457 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.21■□□□□ 0.5
MSH4O15457 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.5
MSH4O15457 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH4O15457 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH4O15457 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH4O15457 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH4O15457 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.2■□□□□ 0.5
MSH4O15457 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.2■□□□□ 0.5
MSH4O15457 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.2■□□□□ 0.5
MSH4O15457 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC18.2■□□□□ 0.5
MSH4O15457 CYP2T1P-202ENST00000641596 2535 ntBASIC18.2■□□□□ 0.5
MSH4O15457 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
MSH4O15457 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.2■□□□□ 0.5
MSH4O15457 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
MSH4O15457 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms