Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC3O15379 AC012569.1-201ENST00000591191 1524 ntBASIC15.9■□□□□ 0.14
HDAC3O15379 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC3O15379 SCARNA2-201ENST00000458748 420 ntBASIC15.9■□□□□ 0.14
HDAC3O15379 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.9■□□□□ 0.14
HDAC3O15379 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.9■□□□□ 0.14
HDAC3O15379 AC025062.2-201ENST00000605477 670 ntBASIC15.9■□□□□ 0.14
HDAC3O15379 AC008608.2-201ENST00000606089 416 ntBASIC15.9■□□□□ 0.14
HDAC3O15379 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC3O15379 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.9■□□□□ 0.14
HDAC3O15379 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.9■□□□□ 0.14
HDAC3O15379 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HDAC3O15379 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.9■□□□□ 0.14
HDAC3O15379 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC15.89■□□□□ 0.13
HDAC3O15379 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.89■□□□□ 0.13
HDAC3O15379 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
HDAC3O15379 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HDAC3O15379 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
HDAC3O15379 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HDAC3O15379 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 AL109954.1-202ENST00000564051 2148 ntBASIC15.88■□□□□ 0.13
HDAC3O15379 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
HDAC3O15379 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC15.88■□□□□ 0.13
HDAC3O15379 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.88■□□□□ 0.13
HDAC3O15379 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.88■□□□□ 0.13
HDAC3O15379 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.88■□□□□ 0.13
HDAC3O15379 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.88■□□□□ 0.13
HDAC3O15379 AL358472.4-201ENST00000633140 710 ntBASIC15.88■□□□□ 0.13
HDAC3O15379 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.88■□□□□ 0.13
HDAC3O15379 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HDAC3O15379 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms