Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 SSR4P1-203ENST00000599569 2260 ntBASIC15.83■□□□□ 0.12
UBFD1O14562 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
UBFD1O14562 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
UBFD1O14562 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UBFD1O14562 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
UBFD1O14562 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.83■□□□□ 0.12
UBFD1O14562 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
UBFD1O14562 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
UBFD1O14562 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.82■□□□□ 0.12
UBFD1O14562 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.82■□□□□ 0.12
UBFD1O14562 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 CRYGEP-201ENST00000412192 528 ntBASIC15.82■□□□□ 0.12
UBFD1O14562 AC026396.1-201ENST00000419388 421 ntBASIC15.82■□□□□ 0.12
UBFD1O14562 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 IGHV3-22-201ENST00000520721 359 ntBASIC15.82■□□□□ 0.12
UBFD1O14562 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.82■□□□□ 0.12
UBFD1O14562 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.82■□□□□ 0.12
UBFD1O14562 AC096734.2-201ENST00000562054 433 ntBASIC15.82■□□□□ 0.12
UBFD1O14562 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.82■□□□□ 0.12
UBFD1O14562 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.82■□□□□ 0.12
UBFD1O14562 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.82■□□□□ 0.12
UBFD1O14562 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.82■□□□□ 0.12
UBFD1O14562 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
UBFD1O14562 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 HAUS4P1-201ENST00000406739 1145 ntBASIC15.81■□□□□ 0.12
UBFD1O14562 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.81■□□□□ 0.12
UBFD1O14562 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.81■□□□□ 0.12
UBFD1O14562 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 CICP13-201ENST00000422015 2789 ntBASIC15.81■□□□□ 0.12
UBFD1O14562 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.81■□□□□ 0.12
UBFD1O14562 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 RNA5SP415-201ENST00000517246 115 ntBASIC15.81■□□□□ 0.12
UBFD1O14562 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.81■□□□□ 0.12
UBFD1O14562 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.81■□□□□ 0.12
UBFD1O14562 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.81■□□□□ 0.12
UBFD1O14562 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.81■□□□□ 0.12
UBFD1O14562 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.81■□□□□ 0.12
UBFD1O14562 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
UBFD1O14562 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.81■□□□□ 0.12
UBFD1O14562 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
UBFD1O14562 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
UBFD1O14562 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
UBFD1O14562 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
UBFD1O14562 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms