Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.94□□□□□ -0.18
SDCBPO00560 AC013268.4-201ENST00000637413 2228 ntBASIC13.94□□□□□ -0.18
SDCBPO00560 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.94□□□□□ -0.18
SDCBPO00560 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SDCBPO00560 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 CDC14C-201ENST00000428251 1719 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 LINC02447-202ENST00000501888 2146 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.93□□□□□ -0.18
SDCBPO00560 PAWRP1-201ENST00000451083 565 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 AC087163.2-201ENST00000457299 853 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.93□□□□□ -0.18
SDCBPO00560 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 RNPS1P1-201ENST00000507437 918 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.93□□□□□ -0.18
SDCBPO00560 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.93□□□□□ -0.18
SDCBPO00560 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.93□□□□□ -0.18
SDCBPO00560 MIR1199-201ENST00000621445 119 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 AL805961.1-202ENST00000641562 540 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SDCBPO00560 PCGF3-213ENST00000620529 1899 ntBASIC13.93□□□□□ -0.18
SDCBPO00560 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SDCBPO00560 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.93□□□□□ -0.18
SDCBPO00560 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC13.92□□□□□ -0.18
SDCBPO00560 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 FAM197Y8-203ENST00000450145 560 ntBASIC13.92□□□□□ -0.18
SDCBPO00560 EMBP1-201ENST00000458200 901 ntBASIC13.92□□□□□ -0.18
SDCBPO00560 AF186996.4-201ENST00000467186 377 ntBASIC13.92□□□□□ -0.18
SDCBPO00560 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.92□□□□□ -0.18
SDCBPO00560 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
SDCBPO00560 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
SDCBPO00560 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC13.92□□□□□ -0.18
SDCBPO00560 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SDCBPO00560 ACE-203ENST00000413513 2237 ntTSL 2 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms