Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC8.39□□□□□ -1.07
LINC01558Q9Y6Z2 INTS4P1-203ENST00000641008 3683 ntBASIC8.39□□□□□ -1.07
LINC01558Q9Y6Z2 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LINC01558Q9Y6Z2 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
LINC01558Q9Y6Z2 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
LINC01558Q9Y6Z2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 KRT8P11-201ENST00000409686 1436 ntBASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 TP73-211ENST00000604074 4806 ntTSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 MPST-204ENST00000404393 1329 ntTSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 TP73-207ENST00000378290 1831 ntTSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 AC132938.5-201ENST00000624980 1813 ntBASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
LINC01558Q9Y6Z2 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 RET-205ENST00000615310 4337 ntTSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 AC090616.6-203ENST00000579186 1945 ntBASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 LINC00895-201ENST00000629028 1637 ntBASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
LINC01558Q9Y6Z2 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms