Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 CRB3P1-201ENST00000449338 276 ntBASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 BANF1P1-201ENST00000553684 263 ntBASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 AL133215.2-201ENST00000609242 977 ntBASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 AC012645.4-201ENST00000610691 1061 ntBASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDP1Q9Y5B0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 AC005225.4-201ENST00000557330 545 ntBASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDP1Q9Y5B0 LINC01144-201ENST00000626198 1710 ntBASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC005622.1-201ENST00000636801 1703 ntBASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC135586.1-201ENST00000539323 574 ntBASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AP001094.4-201ENST00000579008 2176 ntBASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 AC105020.1-201ENST00000435356 2205 ntBASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.8■□□□□ 0.6
CTDP1Q9Y5B0 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.79■□□□□ 0.6
CTDP1Q9Y5B0 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDP1Q9Y5B0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.79■□□□□ 0.6
CTDP1Q9Y5B0 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTDP1Q9Y5B0 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTDP1Q9Y5B0 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms