Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 AC013268.4-201ENST00000637413 2228 ntBASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 AC073347.1-201ENST00000421633 2643 ntBASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
TRAPPC4Q9Y296 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 RNU1-129P-201ENST00000384064 167 ntBASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 KRT19P2-202ENST00000557173 1012 ntBASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 U1.21-201ENST00000580816 167 ntBASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
TRAPPC4Q9Y296 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 PDPK2P-202ENST00000562415 1191 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AC040169.1-201ENST00000565382 521 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AC018845.2-201ENST00000568326 409 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AC021097.1-201ENST00000607902 574 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AL671710.1-201ENST00000610245 2349 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 AL512652.2-201ENST00000625156 1716 ntBASIC15□□□□□ -0.01
TRAPPC4Q9Y296 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
TRAPPC4Q9Y296 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TRAPPC4Q9Y296 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TRAPPC4Q9Y296 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms