Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 AC024909.3-201ENST00000611513 2257 ntBASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.94■□□□□ 0.3
AP4E1Q9UPM8 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AC046158.3-201ENST00000624947 2558 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 FOXO1B-201ENST00000504678 1527 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 MIR648-201ENST00000385046 94 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 SPCS2P4-201ENST00000436160 681 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AL365330.1-201ENST00000607459 531 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AL603832.2-201ENST00000566195 2125 ntBASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.93■□□□□ 0.3
AP4E1Q9UPM8 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 GPX1P2-201ENST00000429271 606 ntBASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 MIR3687-2-201ENST00000577708 61 ntBASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 MIR4469-201ENST00000583919 79 ntBASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 MIR3687-1-201ENST00000614492 61 ntBASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
AP4E1Q9UPM8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms