Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 AC067852.2-201ENST00000590513 2313 ntBASIC19.26■□□□□ 0.67
ZNF541Q9H0D2 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AC005695.3-201ENST00000614522 232 ntBASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AL691432.1-201ENST00000596308 1422 ntBASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 CNN2P8-201ENST00000421872 913 ntBASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 Z93015.1-201ENST00000451718 390 ntBASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
ZNF541Q9H0D2 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 FXNP2-201ENST00000411625 547 ntBASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 TOMM22P5-201ENST00000416399 439 ntBASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 AP002490.2-201ENST00000524791 560 ntBASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ZNF541Q9H0D2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.23■□□□□ 0.67
ZNF541Q9H0D2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms