Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 ISCA2P1-201ENST00000425548 448 ntBASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 AC021723.1-201ENST00000486306 515 ntBASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 MIR5196-201ENST00000578146 115 ntBASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 MIR4754-201ENST00000582477 89 ntBASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.13■□□□□ 0.17
COL25A1Q9BXS0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 AC007881.3-201ENST00000608897 607 ntBASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 AC020916.1-201ENST00000587762 1774 ntBASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 ENPP7P8-202ENST00000527856 1345 ntBASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 KRT8P29-201ENST00000420409 1371 ntBASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL25A1Q9BXS0 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 HNRNPA1P42-201ENST00000458678 957 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC093813.1-201ENST00000605066 256 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC021016.3-201ENST00000608367 477 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 MIR6125-201ENST00000618986 96 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AL023803.2-201ENST00000620080 638 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 LINC01451-201ENST00000623792 534 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 AC073130.3-201ENST00000624389 2278 ntBASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL25A1Q9BXS0 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL25A1Q9BXS0 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms