Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLHC1Q8NHS4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 CDC14C-201ENST00000428251 1719 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AC004870.1-201ENST00000315132 882 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 RNU1-129P-201ENST00000384064 167 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AL513480.1-201ENST00000451731 511 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 LINC02447-202ENST00000501888 2146 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 U1.21-201ENST00000580816 167 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AL031055.1-201ENST00000606362 631 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AL773604.1-201ENST00000617417 272 ntBASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLHC1Q8NHS4 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 AL031284.1-201ENST00000419297 478 ntBASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 AP002469.2-201ENST00000531724 424 ntBASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 DBET-201ENST00000630918 3363 ntBASIC15.71■□□□□ 0.11
CLHC1Q8NHS4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CLHC1Q8NHS4 AC063926.3-201ENST00000624734 5658 ntBASIC15.71■□□□□ 0.1
CLHC1Q8NHS4 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
CLHC1Q8NHS4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms