Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC093724.1-201ENST00000448659 1027 ntBASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC002347.1-201ENST00000569543 541 ntBASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC099522.2-201ENST00000607001 744 ntBASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC091812.2-201ENST00000619081 385 ntBASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CCDC116Q8IYX3 AC073439.1-201ENST00000624121 1774 ntBASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 FAM58CP-201ENST00000435741 640 ntBASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC116Q8IYX3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC116Q8IYX3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms