Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
USP54Q70EL1 LRRFIP1P1-201ENST00000498774 2246 ntBASIC21.26■□□□□ 0.99
USP54Q70EL1 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.26■□□□□ 0.99
USP54Q70EL1 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 MGST3-203ENST00000367885 680 ntTSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 RAC2-202ENST00000401529 569 ntTSL 4 BASIC21.26■□□□□ 0.99
USP54Q70EL1 CNN2P8-201ENST00000421872 913 ntBASIC21.26■□□□□ 0.99
USP54Q70EL1 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC21.26■□□□□ 0.99
USP54Q70EL1 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
USP54Q70EL1 AC009542.2-202ENST00000619004 1067 ntBASIC21.26■□□□□ 0.99
USP54Q70EL1 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.26■□□□□ 0.99
USP54Q70EL1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
USP54Q70EL1 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC21.26■□□□□ 0.99
USP54Q70EL1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP54Q70EL1 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
USP54Q70EL1 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
USP54Q70EL1 RNU1-114P-201ENST00000365297 166 ntBASIC21.25■□□□□ 0.99
USP54Q70EL1 AC092933.1-201ENST00000393644 945 ntBASIC21.25■□□□□ 0.99
USP54Q70EL1 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC21.25■□□□□ 0.99
USP54Q70EL1 USB1-203ENST00000539737 1212 ntTSL 2 BASIC21.25■□□□□ 0.99
USP54Q70EL1 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC21.25■□□□□ 0.99
USP54Q70EL1 IFT20-206ENST00000578122 834 ntTSL 2 BASIC21.25■□□□□ 0.99
USP54Q70EL1 IFT20-208ENST00000578985 831 ntTSL 3 BASIC21.25■□□□□ 0.99
USP54Q70EL1 MIR6799-201ENST00000620297 69 ntBASIC21.25■□□□□ 0.99
USP54Q70EL1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
USP54Q70EL1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
USP54Q70EL1 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC21.25■□□□□ 0.99
USP54Q70EL1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.25■□□□□ 0.99
USP54Q70EL1 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
USP54Q70EL1 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
USP54Q70EL1 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC21.24■□□□□ 0.99
USP54Q70EL1 AC099548.2-209ENST00000480264 625 ntBASIC21.24■□□□□ 0.99
USP54Q70EL1 ZNF767P-206ENST00000513792 565 ntBASIC21.24■□□□□ 0.99
USP54Q70EL1 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC21.24■□□□□ 0.99
USP54Q70EL1 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC21.24■□□□□ 0.99
USP54Q70EL1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
USP54Q70EL1 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
USP54Q70EL1 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
USP54Q70EL1 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 APOC3-202ENST00000375345 604 ntTSL 5 BASIC21.24■□□□□ 0.99
USP54Q70EL1 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC21.24■□□□□ 0.99
USP54Q70EL1 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC21.24■□□□□ 0.99
USP54Q70EL1 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP54Q70EL1 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
USP54Q70EL1 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
USP54Q70EL1 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP54Q70EL1 FAM21FP-201ENST00000426241 1131 ntBASIC21.23■□□□□ 0.99
USP54Q70EL1 AC108725.1-201ENST00000495472 409 ntBASIC21.23■□□□□ 0.99
USP54Q70EL1 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC21.23■□□□□ 0.99
USP54Q70EL1 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC21.23■□□□□ 0.99
USP54Q70EL1 AP001063.1-201ENST00000568332 529 ntBASIC21.23■□□□□ 0.99
USP54Q70EL1 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP54Q70EL1 AC093813.1-201ENST00000605066 256 ntBASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms