Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 TSSC2-201ENST00000450217 709 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 TPSP2-201ENST00000561760 610 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AC091167.2-201ENST00000579581 588 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 GRK6P1-201ENST00000400595 1711 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 GPAA1P2-202ENST00000606848 1787 ntBASIC14.68□□□□□ -0.06
CCDC58Q4VC31 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC58Q4VC31 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 CICP20-201ENST00000443330 2801 ntBASIC14.67□□□□□ -0.06
CCDC58Q4VC31 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 AC107918.4-201ENST00000641966 3141 ntBASIC14.67□□□□□ -0.06
CCDC58Q4VC31 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 THAP5-204ENST00000438865 868 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 LINC01023-201ENST00000606054 436 ntBASIC14.67□□□□□ -0.06
CCDC58Q4VC31 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC58Q4VC31 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC58Q4VC31 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC58Q4VC31 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms