Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 AC002056.1-201ENST00000395613 760 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 AC092474.2-201ENST00000424288 719 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.63□□□□□ -0.07
CLRN1P58418 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.63□□□□□ -0.07
CLRN1P58418 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.63□□□□□ -0.07
CLRN1P58418 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 AL078644.1-201ENST00000609881 752 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 AL513190.1-201ENST00000621254 727 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CLRN1P58418 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN1P58418 U82695.1-201ENST00000635752 1889 ntBASIC14.63□□□□□ -0.07
CLRN1P58418 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CLRN1P58418 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
CLRN1P58418 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN1P58418 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 AC016027.1-202ENST00000607927 1699 ntBASIC14.62□□□□□ -0.07
CLRN1P58418 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
CLRN1P58418 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC14.62□□□□□ -0.07
CLRN1P58418 AC112191.1-201ENST00000523689 701 ntBASIC14.62□□□□□ -0.07
CLRN1P58418 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.62□□□□□ -0.07
CLRN1P58418 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 AC092919.2-201ENST00000623631 1645 ntBASIC14.62□□□□□ -0.07
CLRN1P58418 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.62□□□□□ -0.07
CLRN1P58418 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
CLRN1P58418 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN1P58418 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.61□□□□□ -0.07
CLRN1P58418 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
CLRN1P58418 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.61□□□□□ -0.07
CLRN1P58418 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CLRN1P58418 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms