Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 RNA5SP415-201ENST00000517246 115 ntBASIC15.81■□□□□ 0.12
FOXA1P55317 IGHV3-22-201ENST00000520721 359 ntBASIC15.81■□□□□ 0.12
FOXA1P55317 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.81■□□□□ 0.12
FOXA1P55317 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
FOXA1P55317 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
FOXA1P55317 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
FOXA1P55317 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 CRYGEP-201ENST00000412192 528 ntBASIC15.8■□□□□ 0.12
FOXA1P55317 RHOQP3-201ENST00000437982 621 ntBASIC15.8■□□□□ 0.12
FOXA1P55317 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 AL009183.1-201ENST00000603760 355 ntBASIC15.8■□□□□ 0.12
FOXA1P55317 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXA1P55317 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXA1P55317 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 AC092850.2-201ENST00000623821 2697 ntBASIC15.8■□□□□ 0.12
FOXA1P55317 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXA1P55317 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.79■□□□□ 0.12
FOXA1P55317 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXA1P55317 AC096734.2-201ENST00000562054 433 ntBASIC15.79■□□□□ 0.12
FOXA1P55317 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.79■□□□□ 0.12
FOXA1P55317 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
FOXA1P55317 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.79■□□□□ 0.12
FOXA1P55317 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
FOXA1P55317 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXA1P55317 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXA1P55317 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.79■□□□□ 0.12
FOXA1P55317 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms