Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
LIMK1P53667 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
LIMK1P53667 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMK1P53667 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.07■□□□□ 0.16
LIMK1P53667 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.07■□□□□ 0.16
LIMK1P53667 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.07■□□□□ 0.16
LIMK1P53667 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.07■□□□□ 0.16
LIMK1P53667 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
LIMK1P53667 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.07■□□□□ 0.16
LIMK1P53667 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 MIR4492-201ENST00000581627 80 ntBASIC16.07■□□□□ 0.16
LIMK1P53667 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 CYP2A7P1-201ENST00000595391 815 ntBASIC16.07■□□□□ 0.16
LIMK1P53667 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMK1P53667 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMK1P53667 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
LIMK1P53667 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.07■□□□□ 0.16
LIMK1P53667 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
LIMK1P53667 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIMK1P53667 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 CROCCP4-201ENST00000457096 498 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 TPI1-206ENST00000488464 791 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC023310.3-201ENST00000557027 670 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 AC100756.1-201ENST00000562736 682 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.06■□□□□ 0.16
LIMK1P53667 AC138749.3-201ENST00000567691 622 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 BTNL10-201ENST00000595971 695 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 AC244093.1-201ENST00000610837 814 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 AC116165.1-201ENST00000611806 668 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 WFDC1-204ENST00000613603 549 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.06■□□□□ 0.16
LIMK1P53667 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIMK1P53667 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.06■□□□□ 0.16
LIMK1P53667 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.06■□□□□ 0.16
LIMK1P53667 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIMK1P53667 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.05■□□□□ 0.16
LIMK1P53667 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms