Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.89■□□□□ 0.13
HNF4AP41235 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
HNF4AP41235 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HNF4AP41235 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 AC005622.1-201ENST00000636801 1703 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.88■□□□□ 0.13
HNF4AP41235 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HNF4AP41235 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
HNF4AP41235 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 AC092474.2-201ENST00000424288 719 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
HNF4AP41235 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.88■□□□□ 0.13
HNF4AP41235 AC002347.1-201ENST00000569543 541 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 AC068137.2-201ENST00000605408 478 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.88■□□□□ 0.13
HNF4AP41235 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 U82695.1-201ENST00000635752 1889 ntBASIC15.88■□□□□ 0.13
HNF4AP41235 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HNF4AP41235 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HNF4AP41235 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HNF4AP41235 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.87■□□□□ 0.13
HNF4AP41235 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.87■□□□□ 0.13
HNF4AP41235 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 KRT18P34-201ENST00000488218 1270 ntBASIC15.87■□□□□ 0.13
HNF4AP41235 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 AL592424.1-201ENST00000563624 1536 ntBASIC15.87■□□□□ 0.13
HNF4AP41235 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.87■□□□□ 0.13
HNF4AP41235 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HNF4AP41235 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.87■□□□□ 0.13
HNF4AP41235 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HNF4AP41235 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms