Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXC12P31275 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXC12P31275 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
HOXC12P31275 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXC12P31275 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HOXC12P31275 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXC12P31275 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXC12P31275 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXC12P31275 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXC12P31275 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXC12P31275 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXC12P31275 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 AL592309.1-201ENST00000443127 649 ntBASIC14.52□□□□□ -0.09
HOXC12P31275 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 AC069335.1-201ENST00000489972 472 ntBASIC14.52□□□□□ -0.09
HOXC12P31275 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXC12P31275 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXC12P31275 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXC12P31275 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.52□□□□□ -0.09
HOXC12P31275 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.52□□□□□ -0.09
HOXC12P31275 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXC12P31275 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
HOXC12P31275 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HOXC12P31275 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HOXC12P31275 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 AL671710.1-201ENST00000610245 2349 ntBASIC14.52□□□□□ -0.09
HOXC12P31275 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
HOXC12P31275 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXC12P31275 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 AC006538.1-201ENST00000567905 1585 ntBASIC14.51□□□□□ -0.09
HOXC12P31275 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.51□□□□□ -0.09
HOXC12P31275 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 KRT18P32-201ENST00000424695 1287 ntBASIC14.51□□□□□ -0.09
HOXC12P31275 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 AC079140.1-201ENST00000508039 487 ntBASIC14.51□□□□□ -0.09
HOXC12P31275 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.51□□□□□ -0.09
HOXC12P31275 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXC12P31275 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXC12P31275 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXC12P31275 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms