Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 AC006480.2-201ENST00000609770 1337 ntBASIC16.65■□□□□ 0.26
COL9A1P20849 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL9A1P20849 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.64■□□□□ 0.25
COL9A1P20849 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.64■□□□□ 0.25
COL9A1P20849 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL9A1P20849 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL9A1P20849 ACTG1P3-201ENST00000431775 1114 ntBASIC16.64■□□□□ 0.25
COL9A1P20849 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.64■□□□□ 0.25
COL9A1P20849 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.64■□□□□ 0.25
COL9A1P20849 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL9A1P20849 CU633904.3-201ENST00000624042 1029 ntBASIC16.64■□□□□ 0.25
COL9A1P20849 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL9A1P20849 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL9A1P20849 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
COL9A1P20849 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 KRT8P39-201ENST00000396270 1433 ntBASIC16.63■□□□□ 0.25
COL9A1P20849 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL9A1P20849 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.63■□□□□ 0.25
COL9A1P20849 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC16.63■□□□□ 0.25
COL9A1P20849 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC16.63■□□□□ 0.25
COL9A1P20849 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.63■□□□□ 0.25
COL9A1P20849 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.63■□□□□ 0.25
COL9A1P20849 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC16.63■□□□□ 0.25
COL9A1P20849 MIR3147-201ENST00000577811 66 ntBASIC16.63■□□□□ 0.25
COL9A1P20849 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.63■□□□□ 0.25
COL9A1P20849 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL9A1P20849 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.63■□□□□ 0.25
COL9A1P20849 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
COL9A1P20849 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.63■□□□□ 0.25
COL9A1P20849 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL9A1P20849 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
COL9A1P20849 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL9A1P20849 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL9A1P20849 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms