Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGA1P17096 TPRX2P-201ENST00000535362 881 ntBASIC16.79■□□□□ 0.28
HMGA1P17096 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.79■□□□□ 0.28
HMGA1P17096 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGA1P17096 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGA1P17096 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGA1P17096 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.79■□□□□ 0.28
HMGA1P17096 BNIP3P1-202ENST00000550043 1585 ntBASIC16.79■□□□□ 0.28
HMGA1P17096 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGA1P17096 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGA1P17096 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGA1P17096 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.79■□□□□ 0.28
HMGA1P17096 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HMGA1P17096 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGA1P17096 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGA1P17096 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGA1P17096 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.79■□□□□ 0.28
HMGA1P17096 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
HMGA1P17096 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HMGA1P17096 KRT8P37-201ENST00000451609 1420 ntBASIC16.79■□□□□ 0.28
HMGA1P17096 CU639417.3-201ENST00000624240 1404 ntBASIC16.79■□□□□ 0.28
HMGA1P17096 Z97205.2-201ENST00000564697 1639 ntBASIC16.78■□□□□ 0.28
HMGA1P17096 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGA1P17096 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGA1P17096 AC055876.2-201ENST00000531834 546 ntBASIC16.78■□□□□ 0.28
HMGA1P17096 WASH4P-201ENST00000564273 1246 ntBASIC16.78■□□□□ 0.28
HMGA1P17096 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGA1P17096 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.78■□□□□ 0.28
HMGA1P17096 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.78■□□□□ 0.28
HMGA1P17096 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGA1P17096 AC008494.3-201ENST00000606615 944 ntBASIC16.78■□□□□ 0.28
HMGA1P17096 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
HMGA1P17096 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HMGA1P17096 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGA1P17096 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGA1P17096 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGA1P17096 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HMGA1P17096 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
HMGA1P17096 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
HMGA1P17096 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGA1P17096 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGA1P17096 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.77■□□□□ 0.28
HMGA1P17096 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.77■□□□□ 0.28
HMGA1P17096 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGA1P17096 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGA1P17096 AC099568.2-201ENST00000609194 695 ntBASIC16.77■□□□□ 0.28
HMGA1P17096 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGA1P17096 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGA1P17096 AC138969.3-201ENST00000546612 1459 ntBASIC16.77■□□□□ 0.28
HMGA1P17096 AC138932.2-201ENST00000548268 1459 ntBASIC16.77■□□□□ 0.28
HMGA1P17096 AC126755.4-201ENST00000549796 1459 ntBASIC16.77■□□□□ 0.28
HMGA1P17096 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGA1P17096 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.77■□□□□ 0.28
HMGA1P17096 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
HMGA1P17096 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGA1P17096 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGA1P17096 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HMGA1P17096 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGA1P17096 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGA1P17096 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HMGA1P17096 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGA1P17096 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGA1P17096 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGA1P17096 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms