Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.13■□□□□ 0.33
APOEP02649 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 AL627223.1-201ENST00000416693 442 ntBASIC17.13■□□□□ 0.33
APOEP02649 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 KRT18P32-201ENST00000424695 1287 ntBASIC17.13■□□□□ 0.33
APOEP02649 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.13■□□□□ 0.33
APOEP02649 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.13■□□□□ 0.33
APOEP02649 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.13■□□□□ 0.33
APOEP02649 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.13■□□□□ 0.33
APOEP02649 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
APOEP02649 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.13■□□□□ 0.33
APOEP02649 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 AL513523.2-202ENST00000427283 2040 ntBASIC17.13■□□□□ 0.33
APOEP02649 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
APOEP02649 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
APOEP02649 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.13■□□□□ 0.33
APOEP02649 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 ALOX12P2-203ENST00000570921 1945 ntBASIC17.12■□□□□ 0.33
APOEP02649 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
APOEP02649 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 AC023141.5-201ENST00000458585 616 ntBASIC17.12■□□□□ 0.33
APOEP02649 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 AC069335.1-201ENST00000489972 472 ntBASIC17.12■□□□□ 0.33
APOEP02649 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.12■□□□□ 0.33
APOEP02649 AC105233.2-201ENST00000523697 349 ntBASIC17.12■□□□□ 0.33
APOEP02649 AF228730.5-201ENST00000530288 346 ntBASIC17.12■□□□□ 0.33
APOEP02649 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.12■□□□□ 0.33
APOEP02649 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.12■□□□□ 0.33
APOEP02649 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.12■□□□□ 0.33
APOEP02649 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
APOEP02649 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.12■□□□□ 0.33
APOEP02649 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
APOEP02649 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.12■□□□□ 0.33
APOEP02649 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
APOEP02649 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.11■□□□□ 0.33
APOEP02649 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
APOEP02649 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms