Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCA1O95477 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.72□□□□□ -0.21
ABCA1O95477 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 AL353705.2-201ENST00000428243 662 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 DFFBP1-201ENST00000433250 979 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 AC104794.3-201ENST00000566840 1248 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 CHCHD2P3-201ENST00000603038 451 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 AC004840.1-201ENST00000636359 365 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
ABCA1O95477 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 AL512384.1-201ENST00000406683 331 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 RN7SL837P-201ENST00000463010 287 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.71□□□□□ -0.21
ABCA1O95477 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCA1O95477 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCA1O95477 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCA1O95477 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.71□□□□□ -0.21
ABCA1O95477 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.71□□□□□ -0.21
ABCA1O95477 MIR6799-201ENST00000620297 69 ntBASIC13.71□□□□□ -0.21
ABCA1O95477 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
ABCA1O95477 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCA1O95477 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCA1O95477 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
ABCA1O95477 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.71□□□□□ -0.22
ABCA1O95477 AC092171.3-201ENST00000610122 2651 ntBASIC13.71□□□□□ -0.22
ABCA1O95477 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCA1O95477 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
ABCA1O95477 MYB-201ENST00000316528 3571 ntTSL 5 BASIC13.71□□□□□ -0.22
ABCA1O95477 MYB-241ENST00000616088 3573 ntTSL 5 BASIC13.71□□□□□ -0.22
ABCA1O95477 FOXO1B-201ENST00000504678 1527 ntBASIC13.71□□□□□ -0.22
ABCA1O95477 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC13.71□□□□□ -0.22
ABCA1O95477 AC138969.3-201ENST00000546612 1459 ntBASIC13.71□□□□□ -0.22
ABCA1O95477 AC138932.2-201ENST00000548268 1459 ntBASIC13.71□□□□□ -0.22
ABCA1O95477 AC126755.4-201ENST00000549796 1459 ntBASIC13.71□□□□□ -0.22
ABCA1O95477 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 CROCCP1-201ENST00000426910 5675 ntBASIC13.7□□□□□ -0.22
ABCA1O95477 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 SLC7A15P-201ENST00000424028 1363 ntBASIC13.7□□□□□ -0.22
ABCA1O95477 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC13.7□□□□□ -0.22
ABCA1O95477 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
ABCA1O95477 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA1O95477 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCA1O95477 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCA1O95477 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCA1O95477 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC13.7□□□□□ -0.22
ABCA1O95477 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCA1O95477 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
ABCA1O95477 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms