Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SPDYE11-202ENST00000450699 704 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 SPDYE9P-201ENST00000570642 692 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 SPDYE10P-202ENST00000612005 668 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 SPDYE8P-202ENST00000612377 668 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 AC084121.4-201ENST00000641598 221 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 AF228730.8-201ENST00000642140 221 ntBASIC18.84■□□□□ 0.61
CTDNEP1O95476 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CTDNEP1O95476 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTDNEP1O95476 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CTDNEP1O95476 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CTDNEP1O95476 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CTDNEP1O95476 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CTDNEP1O95476 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CTDNEP1O95476 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CTDNEP1O95476 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
CTDNEP1O95476 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.83■□□□□ 0.61
CTDNEP1O95476 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CTDNEP1O95476 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 ELL2P1-201ENST00000413990 1906 ntBASIC18.83■□□□□ 0.6
CTDNEP1O95476 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 TIMM8BP1-201ENST00000452384 211 ntBASIC18.83■□□□□ 0.6
CTDNEP1O95476 RN7SL589P-201ENST00000481268 310 ntBASIC18.83■□□□□ 0.6
CTDNEP1O95476 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.83■□□□□ 0.6
CTDNEP1O95476 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTDNEP1O95476 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 ACTG1P14-201ENST00000446382 1122 ntBASIC18.82■□□□□ 0.6
CTDNEP1O95476 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 YBX1P5-201ENST00000509441 847 ntBASIC18.82■□□□□ 0.6
CTDNEP1O95476 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.82■□□□□ 0.6
CTDNEP1O95476 AC105339.1-204ENST00000636249 355 ntBASIC18.82■□□□□ 0.6
CTDNEP1O95476 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTDNEP1O95476 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CTDNEP1O95476 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms