Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.37■□□□□ 0.21
SHOX2O60902 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
SHOX2O60902 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
SHOX2O60902 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 MPDU1-223ENST00000582151 728 ntBASIC16.36■□□□□ 0.21
SHOX2O60902 AL138966.2-201ENST00000621997 464 ntBASIC16.36■□□□□ 0.21
SHOX2O60902 AL590326.2-201ENST00000625139 305 ntBASIC16.36■□□□□ 0.21
SHOX2O60902 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.36■□□□□ 0.21
SHOX2O60902 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SHOX2O60902 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.36■□□□□ 0.21
SHOX2O60902 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SHOX2O60902 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 HSPA7-201ENST00000445535 1927 ntBASIC16.35■□□□□ 0.21
SHOX2O60902 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.35■□□□□ 0.21
SHOX2O60902 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.35■□□□□ 0.21
SHOX2O60902 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
SHOX2O60902 KRT18P22-201ENST00000402024 1347 ntBASIC16.35■□□□□ 0.21
SHOX2O60902 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SHOX2O60902 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC16.35■□□□□ 0.21
SHOX2O60902 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.35■□□□□ 0.21
SHOX2O60902 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.35■□□□□ 0.21
SHOX2O60902 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.35■□□□□ 0.21
SHOX2O60902 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SHOX2O60902 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 AL928921.2-201ENST00000641325 2442 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 HBZP1-201ENST00000354915 429 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 AL596275.1-201ENST00000423464 877 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SHOX2O60902 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.34■□□□□ 0.21
SHOX2O60902 SLC25A3P1-201ENST00000443844 931 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms