Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AL008707.1-201ENST00000422498 534 ntBASIC12.41□□□□□ -0.42
COL6A5A8TX70 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AC093813.1-201ENST00000605066 256 ntBASIC12.41□□□□□ -0.42
COL6A5A8TX70 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 NOC2LP1-201ENST00000450578 752 ntBASIC12.41□□□□□ -0.42
COL6A5A8TX70 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CYP4F24P-201ENST00000586049 1580 ntBASIC12.4□□□□□ -0.42
COL6A5A8TX70 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 PTPA-218ENST00000435132 618 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 FGFR3P1-201ENST00000449999 601 ntBASIC12.4□□□□□ -0.42
COL6A5A8TX70 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL6A5A8TX70 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC12.4□□□□□ -0.42
COL6A5A8TX70 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
COL6A5A8TX70 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
COL6A5A8TX70 RN7SL11P-201ENST00000471305 293 ntBASIC12.4□□□□□ -0.43
COL6A5A8TX70 AC026410.3-201ENST00000514280 936 ntBASIC12.4□□□□□ -0.43
COL6A5A8TX70 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.4□□□□□ -0.43
COL6A5A8TX70 EIF5AP2-201ENST00000585668 1047 ntBASIC12.4□□□□□ -0.43
COL6A5A8TX70 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC12.4□□□□□ -0.43
COL6A5A8TX70 ETV2-207ENST00000619399 994 ntTSL 5 BASIC12.4□□□□□ -0.43
COL6A5A8TX70 AC091544.8-201ENST00000619490 361 ntBASIC12.4□□□□□ -0.43
COL6A5A8TX70 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms