Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FAM185BP-201ENST00000443595 716 ntBASIC13.26□□□□□ -0.29
FOXA2Q9Y261 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AC010491.1-201ENST00000563101 2797 ntBASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AC064836.3-201ENST00000607928 673 ntBASIC13.26□□□□□ -0.29
FOXA2Q9Y261 FAM197Y3-203ENST00000618346 717 ntBASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA2Q9Y261 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.25□□□□□ -0.29
FOXA2Q9Y261 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CDC14C-201ENST00000428251 1719 ntBASIC13.25□□□□□ -0.29
FOXA2Q9Y261 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 KRT18P58-201ENST00000527480 1120 ntBASIC13.25□□□□□ -0.29
FOXA2Q9Y261 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 AC096734.2-201ENST00000562054 433 ntBASIC13.25□□□□□ -0.29
FOXA2Q9Y261 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 LINC02447-202ENST00000501888 2146 ntBASIC13.25□□□□□ -0.29
FOXA2Q9Y261 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA2Q9Y261 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.24□□□□□ -0.29
FOXA2Q9Y261 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 DPM2-202ENST00000373110 738 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 IGLL3P-201ENST00000412472 434 ntBASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC13.24□□□□□ -0.29
FOXA2Q9Y261 KRT18P3-201ENST00000451602 1288 ntBASIC13.24□□□□□ -0.29
FOXA2Q9Y261 AL513480.1-201ENST00000451731 511 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms