Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 AC079776.1-201ENST00000401540 1152 ntBASIC18.14■□□□□ 0.49
VTA1Q9NP79 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 EEF1DP4-201ENST00000446006 880 ntBASIC18.14■□□□□ 0.49
VTA1Q9NP79 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.14■□□□□ 0.49
VTA1Q9NP79 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VTA1Q9NP79 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
VTA1Q9NP79 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 TTTY23B-201ENST00000442790 549 ntBASIC18.13■□□□□ 0.49
VTA1Q9NP79 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 ACA64.2-201ENST00000459014 129 ntBASIC18.13■□□□□ 0.49
VTA1Q9NP79 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 AC017083.2-201ENST00000608069 979 ntBASIC18.13■□□□□ 0.49
VTA1Q9NP79 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.13■□□□□ 0.49
VTA1Q9NP79 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VTA1Q9NP79 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 AC243562.2-201ENST00000561247 970 ntBASIC18.12■□□□□ 0.49
VTA1Q9NP79 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
VTA1Q9NP79 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VTA1Q9NP79 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VTA1Q9NP79 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VTA1Q9NP79 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VTA1Q9NP79 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VTA1Q9NP79 RNF216P1-203ENST00000404404 2427 ntBASIC18.11■□□□□ 0.49
VTA1Q9NP79 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VTA1Q9NP79 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms