Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.17□□□□□ -0.14
CHMP1AQ9HD42 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 NCF1C-201ENST00000438382 1427 ntBASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 BET1L-206ENST00000486280 665 ntTSL 3 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 TERC-201ENST00000602385 541 ntBASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AC092119.3-201ENST00000612618 583 ntBASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.16□□□□□ -0.14
CHMP1AQ9HD42 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 AC006277.1-201ENST00000624348 1610 ntBASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms