Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
POLR2J3Q9H1A7 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AP005117.1-202ENST00000581724 1908 ntBASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 DBET-201ENST00000630918 3363 ntBASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 RNPS1P1-201ENST00000507437 918 ntBASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 IFNL4P1-201ENST00000607083 540 ntBASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AC126177.1-201ENST00000547829 2218 ntBASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
POLR2J3Q9H1A7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 MIR4515-201ENST00000584082 81 ntBASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
POLR2J3Q9H1A7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms