Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02228-204ENST00000642115 2962 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 ELK2BP-201ENST00000415014 1224 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 KRT16P4-201ENST00000453883 522 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 AC006504.4-201ENST00000592118 1568 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 PCGF3-213ENST00000620529 1899 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 AC013268.4-201ENST00000637413 2228 ntBASIC14.33□□□□□ -0.12
NKX3-1Q99801 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 KRT8P39-201ENST00000396270 1433 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 AC131009.4-201ENST00000624048 1740 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 FAAHP1-202ENST00000446499 1238 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 PRYP5-201ENST00000451909 266 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 GPAA1P2-202ENST00000606848 1787 ntBASIC14.32□□□□□ -0.12
NKX3-1Q99801 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
NKX3-1Q99801 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
NKX3-1Q99801 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms