Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 KRT18P64-201ENST00000434946 1219 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 PPOX-204ENST00000462866 473 ntTSL 5 BASIC16.76■□□□□ 0.27
CDX2Q99626 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.76■□□□□ 0.27
CDX2Q99626 AC024681.1-201ENST00000521917 487 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 AC135983.4-201ENST00000564116 1262 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 AC009084.3-201ENST00000623356 437 ntBASIC16.76■□□□□ 0.27
CDX2Q99626 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.76■□□□□ 0.27
CDX2Q99626 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CDX2Q99626 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CDX2Q99626 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CDX2Q99626 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.75■□□□□ 0.27
CDX2Q99626 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.75■□□□□ 0.27
CDX2Q99626 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 AC098935.1-201ENST00000446057 611 ntBASIC16.75■□□□□ 0.27
CDX2Q99626 AC125604.1-201ENST00000496255 707 ntBASIC16.75■□□□□ 0.27
CDX2Q99626 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
CDX2Q99626 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.75■□□□□ 0.27
CDX2Q99626 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 COX6A1P2-201ENST00000620597 330 ntBASIC16.75■□□□□ 0.27
CDX2Q99626 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC16.75■□□□□ 0.27
CDX2Q99626 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CDX2Q99626 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.75■□□□□ 0.27
CDX2Q99626 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.75■□□□□ 0.27
CDX2Q99626 AC012317.2-201ENST00000623305 2251 ntBASIC16.75■□□□□ 0.27
CDX2Q99626 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CDX2Q99626 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CDX2Q99626 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.74■□□□□ 0.27
CDX2Q99626 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.74■□□□□ 0.27
CDX2Q99626 MPV17-205ENST00000402310 906 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 CD8B2-202ENST00000417670 633 ntBASIC16.74■□□□□ 0.27
CDX2Q99626 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.74■□□□□ 0.27
CDX2Q99626 AP001582.1-201ENST00000525856 295 ntBASIC16.74■□□□□ 0.27
CDX2Q99626 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 NPM1P43-201ENST00000558669 786 ntBASIC16.74■□□□□ 0.27
CDX2Q99626 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 AC005357.2-202ENST00000590507 1060 ntBASIC16.74■□□□□ 0.27
CDX2Q99626 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CDX2Q99626 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CDX2Q99626 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CDX2Q99626 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
CDX2Q99626 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CDX2Q99626 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC16.73■□□□□ 0.27
CDX2Q99626 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CDX2Q99626 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CDX2Q99626 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms