Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AL135999.2-201ENST00000622438 1686 ntBASIC15.45■□□□□ 0.06
NR1H4Q96RI1 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 KRT89P-201ENST00000620027 1478 ntBASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 MROH4P-201ENST00000431302 1578 ntBASIC15.45■□□□□ 0.06
NR1H4Q96RI1 AC010327.5-201ENST00000586923 3061 ntBASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.45■□□□□ 0.06
NR1H4Q96RI1 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AC006277.1-201ENST00000624348 1610 ntBASIC15.44■□□□□ 0.06
NR1H4Q96RI1 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 SEC1P-202ENST00000473944 940 ntBASIC15.44■□□□□ 0.06
NR1H4Q96RI1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
NR1H4Q96RI1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
NR1H4Q96RI1 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms