Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 DUX4L17-201ENST00000557360 1267 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 MIR3687-2-201ENST00000577708 61 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 MIR3687-1-201ENST00000614492 61 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 AL645728.2-201ENST00000641974 660 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 KRT8P49-201ENST00000604166 1432 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 AC092171.3-201ENST00000610122 2651 ntBASIC15.73■□□□□ 0.11
VMP1Q96GC9 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VMP1Q96GC9 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.73■□□□□ 0.11
VMP1Q96GC9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 TUBB8P12-201ENST00000308911 1335 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 TUBB7P-202ENST00000428444 1305 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 TUBB8P7-204ENST00000567960 1332 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 AC074386.1-202ENST00000463561 864 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 AC091167.2-201ENST00000579581 588 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.72■□□□□ 0.11
VMP1Q96GC9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VMP1Q96GC9 LINC02228-204ENST00000642115 2962 ntBASIC15.72■□□□□ 0.11
VMP1Q96GC9 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 MIR600HG-201ENST00000449175 5984 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 HCG4-201ENST00000418983 998 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 UPF3AP3-201ENST00000420996 769 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 AL031432.2-201ENST00000566714 459 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 AL928711.1-201ENST00000570165 459 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 MIR4515-201ENST00000584082 81 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 AC010327.4-202ENST00000591484 748 ntBASIC15.71■□□□□ 0.11
VMP1Q96GC9 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.71■□□□□ 0.11
VMP1Q96GC9 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VMP1Q96GC9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms