Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 DUX4L17-201ENST00000557360 1267 ntBASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 AL031008.1-201ENST00000619963 541 ntBASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 AL139011.1-202ENST00000642063 584 ntBASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.24■□□□□ 0.03
ZNF540Q8NDQ6 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 PPT1-215ENST00000641471 2368 ntBASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.23■□□□□ 0.03
ZNF540Q8NDQ6 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 NUS1P2-201ENST00000417358 873 ntBASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC106795.1-205ENST00000512851 1056 ntBASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC104692.2-201ENST00000603054 253 ntBASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms