Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUDCD3Q8IVD9 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 MIR3180-1-201ENST00000580374 94 ntBASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 MIR3180-3-201ENST00000584616 94 ntBASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUDCD3Q8IVD9 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 PCED1CP-201ENST00000419887 785 ntBASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 AC087641.1-201ENST00000557561 1021 ntBASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 AL592424.1-201ENST00000563624 1536 ntBASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NUDCD3Q8IVD9 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 AC005622.1-201ENST00000636801 1703 ntBASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
NUDCD3Q8IVD9 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms