Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 KRT18P32-201ENST00000424695 1287 ntBASIC15.96■□□□□ 0.15
VRK3Q8IV63 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 GPS2P2-201ENST00000430745 888 ntBASIC15.96■□□□□ 0.15
VRK3Q8IV63 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
VRK3Q8IV63 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VRK3Q8IV63 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.96■□□□□ 0.14
VRK3Q8IV63 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
VRK3Q8IV63 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.96■□□□□ 0.14
VRK3Q8IV63 AL513523.2-202ENST00000427283 2040 ntBASIC15.95■□□□□ 0.14
VRK3Q8IV63 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AC008741.2-201ENST00000612792 3115 ntBASIC15.95■□□□□ 0.14
VRK3Q8IV63 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.95■□□□□ 0.14
VRK3Q8IV63 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 AP3S2-216ENST00000617003 1561 ntBASIC15.95■□□□□ 0.14
VRK3Q8IV63 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.95■□□□□ 0.14
VRK3Q8IV63 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VRK3Q8IV63 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 AC024909.3-201ENST00000611513 2257 ntBASIC15.94■□□□□ 0.14
VRK3Q8IV63 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 SNHG9-202ENST00000564014 471 ntBASIC15.94■□□□□ 0.14
VRK3Q8IV63 AC061975.2-201ENST00000581722 295 ntBASIC15.94■□□□□ 0.14
VRK3Q8IV63 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
VRK3Q8IV63 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VRK3Q8IV63 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 FAM220BP-201ENST00000377689 816 ntBASIC15.93■□□□□ 0.14
VRK3Q8IV63 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.93■□□□□ 0.14
VRK3Q8IV63 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VRK3Q8IV63 AC023141.5-201ENST00000458585 616 ntBASIC15.93■□□□□ 0.14
VRK3Q8IV63 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms