Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 AC010327.4-202ENST00000591484 748 ntBASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.26■□□□□ 0.67
SYNE3Q6ZMZ3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ELL2P1-201ENST00000413990 1906 ntBASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 AC073439.1-201ENST00000624121 1774 ntBASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 COA5-202ENST00000409997 557 ntTSL 4 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 UPF3AP3-201ENST00000420996 769 ntBASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 AC112482.1-201ENST00000492080 688 ntBASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SYNE3Q6ZMZ3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 GPX1P2-201ENST00000429271 606 ntBASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
SYNE3Q6ZMZ3 AC026691.1-201ENST00000602502 2017 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms